Development and Evolution surveys and illuminates the key themes of rapidly changing fields and areas of controversy that the redefining the theory and philosophy of biology. It continues Stanley Salthe's investigation of evolutionary theory, begun in his influential book Evolving Hierarchical Systems, while negating the implicit philosophical mechanisms of much of that work. Here Salthe attempts to reinitiate a theory of biology from the perspective of development rather than from that of evolution, recognizing the applicability of general (...) systems thinking to biological and social phenomena and pointing towards a non-Darwinian and even a postmodern biology. (shrink)

A materialist construction of semiosis requires system embodiment at particular locales, in order to function as systems of interpretance. I propose that we can use a systemic model of scientific measurement to construct a systems view of semiosis. I further suggest that the categories required to understand that process can be used as templates when generalizing to biosemiosis and beyond. The viewpoint I advance here is that of natural philosophy—which, once granted, incurs no principled block to further generalization all the (...) way to pansemiotics—nearer to Peirce’s own very general perspective. This project requires a hylozooic framework, which I present in the form of a specification hierarchy, whereby physical dynamics subsume all other transactions at more highly developed integrative levels. The upshot of the paper is a proposal that meanings can be assimilated most generally to final causes. (shrink)

I distinguish Nature from the World. I also distinguish development from evolution. Development is progressive change and can be modeled as part of Nature, using a specification hierarchy. I have proposed a ‘canonical developmental trajectory’ of dissipative structures with the stages defined thermodynamically and informationally. I consider some thermodynamic aspects of the Big Bang, leading to a proposal for reviving final cause. This model imposes a ‘hylozooic’ kind of interpretation upon Nature, as all emergent features at higher levels would have (...) been vaguely and episodically present primitively in the lower integrative levels, and were stabilized materially with the developmental emergence of new levels. The specification hierarchy’s form is that of a tree, with its trunk in its lowest level, and so this hierarchy is appropriate for modeling an expanding system like the Universe. It is consistent with this model of differentiation during Big Bang development to view emerging branch tips as having been entrained by multiple finalities because of the top-down integration of the various levels of organization by the higher levels. (shrink)

After deconstructing the thermodynamic concepts of work and waste, I take up Howard Odum’s idea of energy quality, which tallies the overall amount of energy needed to be dissipated in order to accomplish some work of interest. This was developed from economic considerations that give obvious meaning to the work accomplished. But the energy quality idea can be used to import meaning more generally into Nature. It could be viewed as projecting meaning back from any marked work into preceding energy (...) gradient dissipations that immediately paved the way for it. But any work done by an abiotic dissipative structure, since it would be without positive economic significance, would also be difficult to mark as a starting point for the energy quality calculation. Furthermore, any destructive work as by hurricanes or floods, with negative economic significance, would not seem to merit the quality calculation either. But there has been abiotic work of keen interest to us—that which mediated the origin of life. Some kind of abiotic dissipative structures had to have been the framework that fostered this process, regardless of how it might come to be understood in detail. Since all dissipative structures have the same thermodynamic and informational organization in common, any of them might provide the material context for the origin of something. So we can pick any starting point we wish, and calculate backward what sequence of energy usages would have been necessary to set it up. Given such an open ended project, we could not find an obvious place in any sequence to stop and start the forward the calculation, and so we would need to take it right back to an ultimate beginning, like the insolation of some area, or the outpouring of Earth’s thermal energy. Any energy dissipation might be the beginning of something of importance, and so Nature is as replete with potential meanings as it is with energy gradients. (shrink)

After deconstructing the thermodynamic concepts of work and waste, I take up Howard Odum’s idea of energy quality, which tallies the overall amount of energy needed to be dissipated in order to accomplish some work of interest. This was developed from economic considerations that give obvious meaning to the work accomplished. But the energy quality idea can be used to import meaning more generally into Nature. It could be viewed as projecting meaning back from any marked work into preceding energy (...) gradient dissipations that immediately paved the way for it. But any work done by an abiotic dissipative structure, since it would be without positive economic significance, would also be difficult to mark as a starting point for the energy quality calculation. Furthermore, any destructive work as by hurricanes or floods, with negative economic significance, would not seem to merit the quality calculation either. But there has been abiotic work of keen interest to us—that which mediated the origin of life. Some kind of abiotic dissipative structures had to have been the framework that fostered this process, regardless of how it might come to be understood in detail. Since all dissipative structures have the same thermodynamic and informational organization in common, any of them might provide the material context for the origin of something. So we can pick any starting point we wish, and calculate backward what sequence of energy usages would have been necessary to set it up. Given such an open ended project, we could not find an obvious place in any sequence to stop and start the forward the calculation, and so we would need to take it right back to an ultimate beginning, like the insolation of some area, or the outpouring of Earth’s thermal energy. Any energy dissipation might be the beginning of something of importance, and so Nature is as replete with potential meanings as it is with energy gradients. (shrink)

In this paper I provide a framework—what I refer to as ‘development theory’—for Ulanowicz’s ascendency theory of ecosystem development. Development theory is based in thermodynamics and information theory. A prominent feature of development theory is an understanding of senescence.

The INBIOSA project brings together a group of experts across many disciplines who believe that science requires a revolutionary transformative step in order to address many of the vexing challenges presented by the world. It is INBIOSA’s purpose to enable the focused collaboration of an interdisciplinary community of original thinkers. This paper sets out the case for support for this effort. The focus of the transformative research program proposal is biology-centric. We admit that biology to date has been more fact-oriented (...) and less theoretical than physics. However, the key leverageable idea is that careful extension of the science of living systems can be more effectively applied to some of our most vexing modern problems than the prevailing scheme, derived from abstractions in physics. While these have some universal application and demonstrate computational advantages, they are not theoretically mandated for the living. A new set of mathematical abstractions derived from biology can now be similarly extended. This is made possible by leveraging new formal tools to understand abstraction and enable computability. [The latter has a much expanded meaning in our context from the one known and used in computer science and biology today, that is "by rote algorithmic means", since it is not known if a living system is computable in this sense (Mossio et al., 2009).] Two major challenges constitute the effort. The first challenge is to design an original general system of abstractions within the biological domain. The initial issue is descriptive leading to the explanatory. There has not yet been a serious formal examination of the abstractions of the biological domain. What is used today is an amalgam; much is inherited from physics (via the bridging abstractions of chemistry) and there are many new abstractions from advances in mathematics (incentivized by the need for more capable computational analyses). Interspersed are abstractions, concepts and underlying assumptions “native” to biology and distinct from the mechanical language of physics and computation as we know them. A pressing agenda should be to single out the most concrete and at the same time the most fundamental process-units in biology and to recruit them into the descriptive domain. Therefore, the first challenge is to build a coherent formal system of abstractions and operations that is truly native to living systems. Nothing will be thrown away, but many common methods will be philosophically recast, just as in physics relativity subsumed and reinterpreted Newtonian mechanics. -/- This step is required because we need a comprehensible, formal system to apply in many domains. Emphasis should be placed on the distinction between multi-perspective analysis and synthesis and on what could be the basic terms or tools needed. The second challenge is relatively simple: the actual application of this set of biology-centric ways and means to cross-disciplinary problems. In its early stages, this will seem to be a “new science”. This White Paper sets out the case of continuing support of Information and Communication Technology (ICT) for transformative research in biology and information processing centered on paradigm changes in the epistemological, ontological, mathematical and computational bases of the science of living systems. Today, curiously, living systems cannot be said to be anything more than dissipative structures organized internally by genetic information. There is not anything substantially different from abiotic systems other than the empirical nature of their robustness. We believe that there are other new and unique properties and patterns comprehensible at this bio-logical level. The report lays out a fundamental set of approaches to articulate these properties and patterns, and is composed as follows. -/- Sections 1 through 4 (preamble, introduction, motivation and major biomathematical problems) are incipient. Section 5 describes the issues affecting Integral Biomathics and Section 6 -- the aspects of the Grand Challenge we face with this project. Section 7 contemplates the effort to formalize a General Theory of Living Systems (GTLS) from what we have today. The goal is to have a formal system, equivalent to that which exists in the physics community. Here we define how to perceive the role of time in biology. Section 8 describes the initial efforts to apply this general theory of living systems in many domains, with special emphasis on crossdisciplinary problems and multiple domains spanning both “hard” and “soft” sciences. The expected result is a coherent collection of integrated mathematical techniques. Section 9 discusses the first two test cases, project proposals, of our approach. They are designed to demonstrate the ability of our approach to address “wicked problems” which span across physics, chemistry, biology, societies and societal dynamics. The solutions require integrated measurable results at multiple levels known as “grand challenges” to existing methods. Finally, Section 10 adheres to an appeal for action, advocating the necessity for further long-term support of the INBIOSA program. -/- The report is concluded with preliminary non-exclusive list of challenging research themes to address, as well as required administrative actions. The efforts described in the ten sections of this White Paper will proceed concurrently. Collectively, they describe a program that can be managed and measured as it progresses. (shrink)

Recognition that biological systems are stabilized far from equilibrium by self-organizing, informed, autocatalytic cycles and structures that dissipate unusable energy and matter has led to recent attempts to reformulate evolutionary theory. We hold that such insights are consistent with the broad development of the Darwinian Tradition and with the concept of natural selection. Biological systems are selected that re not only more efficient than competitors but also enhance the integrity of the web of energetic relations in which they are embedded. (...) But the expansion of the informational phase space, upon which selection acts, is also guaranteed by the properties of open informational-energetic systems. This provides a directionality and irreversibility to evolutionary processes that are not reflected in current theory.For this thermodynamically-based program to progress, we believe that biological information should not be treated in isolation from energy flows, and that the ecological perspective must be given descriptive and explanatory primacy. Levels of the ecological hierarchy are relational parts of ecological systems in which there are stable, informed patterns of energy flow and entropic dissipation. Isomorphies between developmental patterns and ecological succession are revealing because they suggest that much of the encoded metabolic information in biological systems is internalized ecological information. The geneological hierarchy, to the extent that its information content reflects internalized ecological information, can therefore be redescribed as an ecological hierarchy. (shrink)

Appeals to science as a help in constructing policy on complex issues often assume that science has relatively clear-cut, univocal answers. That is not so today in the environmentally crucial fields of ecology and evolutionary biology. The social role of science has been as a source of information to be used in the prediction and domination of nature. Its perspectives are finely honed for such purposes. However, other more conscientious perspectives are now appearing within science, and we provide an example (...) here in rebuttal to the claim that there is no warrant from within ecology for ecosystem moral considerability. (shrink)

Appeals to science as a help in constructing policy on complex issues often assume that science has relatively clear-cut, univocal answers. That is not so today in the environmentally crucial fields of ecology and evolutionary biology. The social role of science has been as a source of information to be used in the prediction and domination of nature. Its perspectives are finely honed for such purposes. However, other more conscientious perspectives are now appearing within science, and we provide an example (...) here in rebuttal to the claim that there is no warrant from within ecology for ecosystem moral considerability. (shrink)

The class of all recursive functions fails to possess a natural hierarchical structure, generated predicatively from "within". On the other hand, many (proof-theoretically significant) sub-recursive classes do. This paper attempts to measure the limit of predicative generation in this context, by classifying and characterizing those (predictably terminating) recursive functions which can be successively defined according to an autonomy condition of the form: allow recursions only over well-orderings which have already been "coded" at previous levels. The question is: how can a (...) recursion code a well-ordering? The answer lies in Girard's theory of dilators, but is reworked here in a quite different and simplified framework specific to our purpose. The "accessible" recursive functions thus generated turn out to be those provably recursive in $(\prod_{1}^{1}-CA)_{0}$. (shrink)

Girard’s maxim, that Peano Arithmetic is a theory of one inductive definition, is re-examined in the light of a weak theory EA formalising basic principles of Nelson’s predicative Arithmetic.

Clearly and succinctly describes the standards of God-like living as taught by the Orthodox Church. Eleven chapters deal with our relationships with God, our selves and our neighbors from both the personal and churchly perspectives. Readers will find it a veritable source book of biblical and patristic material on the practical aspects of Orthodox life. Among the topics covered are issues of personal religious life, family life, sex ethics, bioethics, the Christian and culture, the state, peace and war, economic responsibilities, (...) inter-church relations and hundreds of other ethics-related issues. Thoroughly indexed, the material in the book is easy to get to for reference. 2nd printing. (shrink)

This article seeks to identify some of the major perspectives in Eastern Orthodox Christianity which provide direction for bioethical-decision making. The article first identifies some historical, theological, and liturgical sources in the Eastern Orthodox tradition which have implications for bioethics. The manuscript also seeks to address the question of the place of religious bioethics within public discussion of issues in bioethics and health care policy. Keywords: bioethics, Eastern Orthodox, faith, liturgy, secular, tradition CiteULike Connotea Del.icio.us What's this?

This book demonstrates how an interest in political argument leads naturally to a philosophical way of thinking. It analyses both practising politicans and political theorists and is a much needed introudction to two vitally important, and independent, disciplines.

This book examines the underlying theoretical issues concerning the nature of political freedom. Arguing that most previous discussions of such freedom have been too narrowly focused, it explores both conservativism from Edmund Burke to its present resurgence, the radical tradition of Karl Marx, as well as the orthodox liberal model of freedom of John Locke, John Stuart Mill and Isaiah Berlin. Political Freedom argues that these three accounts of political freedom - conservative, liberal and radical - all have internal weaknesses (...) which render them unsatisfactory. In the second part of the book George Brenkert develops an alternative theory of political freedom. Using the guiding concept of empowerment, his model explores individual rights, democratic participation in government and workplace, and the need to provide the material and educational resources to allow individuals to effectively exercise their rights to self-determination. It is a clear and bold attack on the view that there is no link between freedom and power. (shrink)

Eastern Orthodox Christianity carries forward a moral tradition from the earliest Christian period, in the belief that scriptural and patristic teaching remains applicable to the contemporary economic sphere of life. The Church Fathers focused on the ownership of property and the ethical acquisition of wealth and its use; they stressed special concern for the poor and disadvantaged. Carried forward through the Byzantine and modern eras, these early Christian understandings now can be applied through a basic and elementary natural law morality (...) to business activities. The Orthodox approach embodies traditional virtue and character ethics as well. The essay concludes by applying these Orthodox approaches to two current issues: the charging of interest and internet ethics. (shrink)

ABSTRACT In the course of her defence of German protesters against Peter Singer's lectures, Jenny Teichman claims that the right to make use of a public platform is not covered by the principle of freedom of expression. I argue that this view is mistaken, and that she is also wrong to focus on whether Singer deserved a public platform. Instead I suggest that what matters is whether there was an attempt to prevent communication between a speaker and willing hearers. But (...) I agree with Teichman that there are some relevant differences between speaking from a public platform and speaking privately. In particular I argue that protesters have a right, though not one based on freedom of expression, to interrupt a public speaker. Such a right is on a par with the speaker's freedom to draw public attention to the fact that she has opinions which she thinks worthy of a hearing, and in exercising it a protester must not prevent those who wish to hear the speech from doing so. Finally I offer an argument against the view that disrupting Singer's lectures could be seen as a justified interference with freedom of expression. (shrink)

Wilfred Sieg and Stanley S. Wainer. Program Transformation and Proof Transformation.

Following our [6], though with somewhat different methods here, further variants of Goodstein sequences are introduced in terms of parameterized Ackermann–Péter functions. Each of the sequences is shown to terminate, and the proof-theoretic strengths of these facts are calibrated by means of ordinal assignments, yielding independence results for a range of theories: PRA, PA,$\Sigma ^1_1$-DC$_0$, ATR$_0$, up to ID$_1$. The key is the so-called “Hardy hierarchy” of proof-theoretic bounding finctions, providing a uniform method for associating Goodstein-type sequences with parameterized normal (...) form representations of positive integers. (shrink)

This paper presents a viewpoint on natural philosophy focusing on the organization of substance, as well as its changes as invited by the Second Law of thermodynamics. Modes of change are pointed to as definitive of levels of organization; these include physical, chemical, and biological modes of change. Conceptual uses of the subsumptive hierarchy format are employed throughout this paper. Developmental change in dissipative structures is examined in some detail, generating an argument for the use of final causality in studies (...) of natural systems. Considerations of ‘internalism’ in science are presented along the way. (shrink)

Book reviewed in this article: Rights and Advocacy for Retarded People. By Stanley S. Herr. Lexington.

There is a very simple way in which the safe/normal variable discipline of Bellantoni–Cook recursion [S. Bellantoni, S. Cook, A new recursion theoretic characterization of the polytime functions, Computational Complexity 2 97–110] can be imposed on arithmetical theories like PA: quantify over safes and induct on normals. This weakens the theory severely, so that the provably recursive functions become more realistically computable . Earlier results of D. Leivant [Intrinsic theories and computational complexity, in: D. Leivant , Logic and Computational Complexity, (...) Lecture Notes in Computer Science, vol. 960, Springer-Verlag, 1995, pp. 177–194] are re-worked and extended in this new context, giving proof-theoretic characterizations of complexity classes between Grzegorczyk’s E2 and E3. (shrink)

This work is derived from the SERC "Logic for IT" Summer School Conference on Proof Theory held at Leeds University. The contributions come from acknowledged experts and comprise expository and research articles which form an invaluable introduction to proof theory aimed at both mathematicians and computer scientists.

This paper compares the two known logical forms of hierarchy, both of which have been used in models of natural phenomena, including the biological. I contrast their general properties, internal formal relations, modes of growth (emergence) in applications to the natural world, criteria for applying them, the complexities that they embody, their dynamical relations in applied models, and their informational relations and semiotic aspects.

I begin with the definition of power, and find that it is finalistic inasmuch as work directs energy dissipation in the interests of some system. The maximum power principle of Lotka and Odum implies an optimal energy efficiency for any work; optima are also finalities. I advance a statement of the maximum entropy production principle, suggesting that most work of dissipative structures is carried out at rates entailing energy flows faster than those that would associate with maximum power. This is (...) finalistic in the sense that the out-of-equilibrium universe, taken as an isolated system, entrains work in the interest of global thermodynamic equilibration. I posit an evolutionary scenario, with a development on Earth from abiotic times, when promoting convective energy flows could be viewed as the important function of dissipative structures, to biotic times when the preservation of living dissipative structures was added to the teleology. Dissipative structures are required by the equilibrating universe to enhance local energy gradient dissipation. (shrink)